Collective intelligence: A unifying concept for integrating biology across scales and substrates

P McMillen, M Levin - Communications Biology, 2024 - nature.com
A defining feature of biology is the use of a multiscale architecture, ranging from molecular
networks to cells, tissues, organs, whole bodies, and swarms. Crucially however, biology is …

Principles and applications of optogenetics in developmental biology

D Krueger, E Izquierdo, R Viswanathan… - …, 2019 - journals.biologists.com
The development of multicellular organisms is controlled by highly dynamic molecular and
cellular processes organized in spatially restricted patterns. Recent advances in …

Controlling organization and forces in active matter through optically defined boundaries

TD Ross, HJ Lee, Z Qu, RA Banks, R Phillips… - Nature, 2019 - nature.com
Living systems are capable of locomotion, reconfiguration and replication. To perform these
tasks, cells spatiotemporally coordinate the interactions of force-generating,'active'molecules …

[HTML][HTML] Tracing information flow from Erk to target gene induction reveals mechanisms of dynamic and combinatorial control

MZ Wilson, PT Ravindran, WA Lim, JE Toettcher - Molecular cell, 2017 - cell.com
Cell signaling networks coordinate specific patterns of protein expression in response to
external cues, yet the logic by which signaling pathway activity determines the eventual …

Theory of mechanochemical patterning and optimal migration in cell monolayers

D Boocock, N Hino, N Ruzickova, T Hirashima… - Nature physics, 2021 - nature.com
Collective cell migration offers a rich field of study for non-equilibrium physics and cellular
biology, revealing phenomena such as glassy dynamics, pattern formation and active …

Signaling dynamics control cell fate in the early Drosophila embryo

HE Johnson, JE Toettcher - Developmental cell, 2019 - cell.com
The Erk mitogen-activated protein kinase plays diverse roles in animal development. Its
widespread reuse raises a conundrum: when a single kinase like Erk is activated, how does …

The red edge: bilin-binding photoreceptors as optogenetic tools and fluorescence reporters

K Tang, HM Beyer, MD Zurbriggen… - Chemical …, 2021 - ACS Publications
This review adds the bilin-binding phytochromes to the Chemical Reviews thematic issue
“Optogenetics and Photopharmacology”. The work is structured into two parts. We first …

A bright future: optogenetics to dissect the spatiotemporal control of cell behavior

AG Goglia, JE Toettcher - Current opinion in chemical biology, 2019 - Elsevier
Cells sense, process, and respond to extracellular information using signaling networks:
collections of proteins that act as precise biochemical sensors. These protein networks are …

Red light optogenetics in neuroscience

K Lehtinen, MS Nokia, H Takala - Frontiers in Cellular Neuroscience, 2022 - frontiersin.org
Optogenetics, a field concentrating on controlling cellular functions by means of light-
activated proteins, has shown tremendous potential in neuroscience. It possesses superior …

Optophysiology: Illuminating cell physiology with optogenetics

P Tan, L He, Y Huang, Y Zhou - Physiological reviews, 2022 - journals.physiology.org
Optogenetics combines light and genetics to enable precise control of living cells, tissues,
and organisms with tailored functions. Optogenetics has the advantages of …