Genomics and epidemiology of the P. 1 SARS-CoV-2 lineage in Manaus, Brazil

NR Faria, TA Mellan, C Whittaker, IM Claro… - Science, 2021 - science.org
Cases of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection in
Manaus, Brazil, resurged in late 2020 despite previously high levels of infection. Genome …

[HTML][HTML] Characterizing SARS-CoV-2 genome diversity circulating in South American countries: Signatures of potentially emergent lineages?

M Muñoz, LH Patiño, N Ballesteros… - International Journal of …, 2021 - Elsevier
Objectives To evaluate the genomic diversity and geographic distribution of SARS-CoV-2
lineages in South America. Methods SARS-CoV-2 lineages from a public dataset of 5583 …

[PDF][PDF] Genomic characterisation of an emergent SARS-CoV-2 lineage in Manaus: preliminary findings

NR Faria, IM Claro, D Candido, LAM Franco… - Virological, 2021 - academia.edu
We have detected a new variant circulating in December in Manaus, Amazonas state, north
Brazil, where very high attack rates have been estimated previously. The new lineage …

Genomic epidemiology of the SARS-CoV-2 epidemic in Brazil

M Giovanetti, SN Slavov, V Fonseca, E Wilkinson… - Nature …, 2022 - nature.com
The high numbers of COVID-19 cases and deaths in Brazil have made Latin America an
epicentre of the pandemic. SARS-CoV-2 established sustained transmission in Brazil early …

[HTML][HTML] SARS-CoV-2 introduction and lineage dynamics across three epidemic peaks in Southern Brazil: massive spread of P. 1

APM Varela, J Prichula, FQ Mayer, RS Salvato… - Infection, Genetics and …, 2021 - Elsevier
Genomic surveillance of SARS-CoV-2 is paramount for understanding viral dynamics,
contributing to disease control. This study analyzed SARS-CoV-2 genomic diversity in Rio …

Genomic epidemiology of SARS-CoV-2 in Esteio, Rio Grande do Sul, Brazil

VB Franceschi, GD Caldana, A de Menezes Mayer… - BMC genomics, 2021 - Springer
Background Brazil is the third country most affected by Coronavirus disease-2019 (COVID-
19), but viral evolution in municipality resolution is still poorly understood in Brazil and it is …

Genomic surveillance of SARS-CoV-2 reveals community transmission of a major lineage during the early pandemic phase in Brazil

PC Resende, E Delatorre, T Gräf, D Mir, FC Motta… - BioRxiv, 2020 - biorxiv.org
Despite all efforts to control the COVID-19 spread, the SARS-CoV-2 reached South America
within three months after its first detection in China, and Brazil became one of the hotspots of …

Genomic surveillance of SARS-CoV-2 tracks early interstate transmission of P. 1 lineage and diversification within P. 2 clade in Brazil

AP Lamarca, LGP de Almeida… - PLoS neglected …, 2021 - journals.plos.org
The sharp increase of COVID-19 cases in late 2020 has made Brazil the new epicenter of
the ongoing SARS-CoV-2 pandemic. The novel viral lineages P. 1 (Variant of Concern …

Genetic analysis of SARS-CoV-2 variants in Mexico during the first year of the COVID-19 pandemic

B Taboada, S Zárate, P Iša, C Boukadida… - Viruses, 2021 - mdpi.com
During the first year of the SARS-CoV-2 pandemic in Mexico, more than two million people
were infected. In this study, we analyzed full genome sequences from 27 February 2020 to …

SARS-CoV-2 introductions and early dynamics of the epidemic in Portugal

V Borges, J Isidro, NS Trovão, S Duarte… - Communications …, 2022 - nature.com
Background Genomic surveillance of SARS-CoV-2 in Portugal was rapidly implemented by
the National Institute of Health in the early stages of the COVID-19 epidemic, in collaboration …