A new system for aligning whole genome sequences is described. Using an efficient data
structure called a suffix tree, the system is able to rapidly align sequences containing …

We describe a suffix-tree algorithm that can align the entire genome sequences of
eukaryotic and prokaryotic organisms with minimal use of computer time and memory. The …

A strategy is described for the rapid alignment of many long nucleic acid or protein
sequences on a microcomputer. The program described can handle up to 100 sequences of …

A two-step multiple alignment strategy is presented that allows rapid alignment of a set of
homologous sequences and comparison of pre-aligned groups of sequences. Examples are …

An approach for performing multiple alignments of large numbers of amino acid or
nucleotide sequences is described. The method is based on first deriving a phylogenetic …

Motivation: To allow a direct comparison of the genomic DNA sequences of sufficiently
similar organisms, there is an urgent need for software tools that can align more than two …

Currently there are several computer algorithms available for aligning two biological
sequences. When more than two sequences are to be aligned, however, pairwise …

CLUSTAL is a package for performing fast and reliable automatic multiple alignment of
many DNA or protein sequences. It was originally written for IBM-compatible …

We address the problem of efficiently aligning a transcribed and spliced DNA sequence with
a genomic sequence containing that gene, allowing for introns in the genomic sequence …

We present TranslatorX, a web server designed to align protein-coding nucleotide
sequences based on their corresponding amino acid translations. Many comparisons …