Rate, spectrum, and evolutionary dynamics of spontaneous epimutations

A Van Der Graaf, R Wardenaar… - Proceedings of the …, 2015 - National Acad Sciences
Stochastic changes in cytosine methylation are a source of heritable epigenetic and
phenotypic diversity in plants. Using the model plant Arabidopsis thaliana, we derive robust …

Epimutations define a fast-ticking molecular clock in plants

N Yao, RJ Schmitz, F Johannes - Trends in Genetics, 2021 - cell.com
Stochastic gains and losses of DNA methylation at CG dinucleotides are a frequent
occurrence in plants. These spontaneous 'epimutations' occur at a rate that is 100 000 times …

Molecular properties of epimutation hotspots

RR Hazarika, M Serra, Z Zhang, Y Zhang, RJ Schmitz… - Nature plants, 2022 - nature.com
Mistakes in the maintenance of CG methylation are a source of heritable epimutations in
plants. Multigenerational surveys indicate that the rate of these stochastic events varies …

Spontaneous epimutations in plants

F Johannes, RJ Schmitz - New Phytologist, 2019 - Wiley Online Library
Contents Summary 1253 I. Introduction 1253 II. What is the rate and molecular spectrum of
spontaneous epimutations? 1254 III. Do spontaneous epimutations have phenotypic …

Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage

J Hagmann, C Becker, J Müller, O Stegle… - PLoS …, 2015 - journals.plos.org
There has been much excitement about the possibility that exposure to specific
environments can induce an ecological memory in the form of whole-sale, genome-wide …

Genome-wide epigenetic perturbation jump-starts patterns of heritable variation found in nature

F Roux, M Colomé-Tatché, C Edelist, R Wardenaar… - Genetics, 2011 - academic.oup.com
We extensively phenotyped 6000 Arabidopsis plants with experimentally perturbed DNA
methylomes as well as a diverse panel of natural accessions in a common garden. We …

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

C Becker, J Hagmann, J Müller, D Koenig, O Stegle… - Nature, 2011 - nature.com
Heritable epigenetic polymorphisms, such as differential cytosine methylation, can underlie
phenotypic variation,. Moreover, wild strains of the plant Arabidopsis thaliana differ in many …

Epigenetic and epigenomic variation in Arabidopsis thaliana

RJ Schmitz, JR Ecker - Trends in plant science, 2012 - cell.com
Arabidopsis thaliana (Arabidopsis) is ideally suited for studies of natural phenotypic
variation. This species has also provided an unparalleled experimental system to explore …

Environmentally responsive genome-wide accumulation of de novo Arabidopsis thaliana mutations and epimutations

C Jiang, A Mithani, EJ Belfield, R Mott… - Genome …, 2014 - genome.cshlp.org
Evolution is fueled by phenotypic diversity, which is in turn due to underlying heritable
genetic (and potentially epigenetic) variation. While environmental factors are well known to …

Stable inheritance of DNA methylation allows creation of epigenotype maps and the study of epiallele inheritance patterns in the absence of genetic variation

BT Hofmeister, K Lee, NA Rohr, DW Hall, RJ Schmitz - Genome biology, 2017 - Springer
Background Differences in DNA methylation can arise as epialleles, which are loci that differ
in chromatin state and are inherited over generations. Epialleles offer an additional source …