[PDF][PDF] Identification of barcodes in nanopore sequencing data

BA Goga - researchgate.net
DNA sequencing multiplexing is a technique that allows simultaneous sequencing of
multiple genomes. This method is economically advantageous, since it uses a singleuse …

[HTML][HTML] Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks

RR Wick, LM Judd, KE Holt - PLoS computational biology, 2018 - journals.plos.org
Multiplexing, the simultaneous sequencing of multiple barcoded DNA samples on a single
flow cell, has made Oxford Nanopore sequencing cost-effective for small genomes …

Real-time demultiplexing Nanopore barcoded sequencing data with npBarcode

SH Nguyen, TPS Duarte, LJM Coin, MD Cao - Bioinformatics, 2017 - academic.oup.com
Motivation The recent introduction of a barcoding protocol for Oxford Nanopore sequencing
has increased the versatility of the technology. Several bioinformatics tools have been …

A hybrid unsupervised approach for accurate short read clustering and barcoded sample demultiplexing in nanopore sequencing

R Han, J Qi, Y Xue, X Sun, F Zhang, X Gao, G Li - bioRxiv, 2022 - biorxiv.org
Short nucleic acid sequences are usually attached as DNA barcodes for multiple sample
sequencing and single cell protocols, which enables Oxford Nanopore sequencing to …

[HTML][HTML] HycDemux: a hybrid unsupervised approach for accurate barcoded sample demultiplexing in nanopore sequencing

R Han, J Qi, Y Xue, X Sun, F Zhang, X Gao, G Li - Genome biology, 2023 - Springer
DNA barcodes enable Oxford Nanopore sequencing to sequence multiple barcoded DNA
samples on a single flow cell. DNA sequences with the same barcode need to be grouped …

High accuracy base calls in nanopore sequencing

P Faucon, R Trevino, P Balachandran… - Proceedings of the 6th …, 2017 - dl.acm.org
Nanopore sequencing has introduced the ability to sequence long stretches of DNA,
enabling the resolution of repeating segments, or paired SNPs across long stretches of …

RawHash: enabling fast and accurate real-time analysis of raw nanopore signals for large genomes

C Firtina, N Mansouri Ghiasi, J Lindegger… - …, 2023 - academic.oup.com
Nanopore sequencers generate electrical raw signals in real-time while sequencing long
genomic strands. These raw signals can be analyzed as they are generated, providing an …

Barapost: binning of nucleotide sequences according to taxonomic annotation

MA Sikolenko, LN Valentovich - IEEE/ACM Transactions on …, 2020 - ieeexplore.ieee.org
Contemporary sequencing technologies, Oxford Nanopore in particular, provide a way to
sequence multiple samples during single run using molecular barcodes. Specific …

Real-time selective sequencing using nanopores and deep learning

A Danilevsky, AL Polsky, N Shomron - 2021 - researchsquare.com
Nanopore sequencing is an emerging technology that utilizes a unique method of reading
nucleic acid sequences and, at the same time, it detects various chemical modifications …

[PDF][PDF] Monitoring and Controlling Nanopore Sequencing Runs

BM Fedor - itspy.cz
Modern nanopore sequencers provide users with the option to decide if a DNA sequence is
rejected or sequenced. Decisions are made based on the raw nanopore signal in real time …