[HTML][HTML] Multimodal analysis of composition and spatial architecture in human squamous cell carcinoma

AL Ji, AJ Rubin, K Thrane, S Jiang, DL Reynolds… - Cell, 2020 - cell.com
To define the cellular composition and architecture of cutaneous squamous cell carcinoma
(cSCC), we combined single-cell RNA sequencing with spatial transcriptomics and …

Spatial transcriptomics

AC Anderson, I Yanai, LR Yates, L Wang, A Swarbrick… - Cancer Cell, 2022 - cell.com
Spatial transcriptomics, with other spatial technologies, has enabled scientists to dissect the
organization and interaction of different cell types within the tumor microenvironment. We …

[HTML][HTML] Mapping spatial heterogeneity in the tumor microenvironment: a new era for digital pathology

A Heindl, S Nawaz, Y Yuan - Laboratory investigation, 2015 - Elsevier
The emergent field of digital pathology employing automated image analysis techniques is
to revolutionize traditional pathology at the center of clinical diagnostics. Histological images …

Multiscale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma

C Ganier, P Mazin… - Proceedings of the …, 2024 - National Acad Sciences
Our understanding of how human skin cells differ according to anatomical site and tumour
formation is limited. To address this, we have created a multiscale spatial atlas of healthy …

Functionally distinct cancer-associated fibroblast subpopulations establish a tumor promoting environment in squamous cell carcinoma

S Schütz, L Solé-Boldo, C Lucena-Porcel… - Nature …, 2023 - nature.com
Cutaneous squamous cell carcinoma (cSCC) is a serious public health problem due to its
high incidence and metastatic potential. It may progress from actinic keratosis (AK), a …

Single-cell spatial architectures associated with clinical outcome in head and neck squamous cell carcinoma

KE Blise, S Sivagnanam, GL Banik… - NPJ precision …, 2022 - nature.com
There is increasing evidence that the spatial organization of cells within the tumor-immune
microenvironment (TiME) of solid tumors influences survival and response to therapy in …

Pan-cancer spatially resolved single-cell analysis reveals the crosstalk between cancer-associated fibroblasts and tumor microenvironment

C Ma, C Yang, A Peng, T Sun, X Ji, J Mi, L Wei… - Molecular Cancer, 2023 - Springer
Cancer-associated fibroblasts (CAFs) are a heterogeneous cell population that plays a
crucial role in remodeling the tumor microenvironment (TME). Here, through the integrated …

[HTML][HTML] Single-cell transcriptomic analysis of primary and metastatic tumor ecosystems in head and neck cancer

SV Puram, I Tirosh, AS Parikh, AP Patel, K Yizhak… - Cell, 2017 - cell.com
The diverse malignant, stromal, and immune cells in tumors affect growth, metastasis, and
response to therapy. We profiled transcriptomes of∼ 6,000 single cells from 18 head and …

High-dimensional multiplexed immunohistochemical characterization of immune contexture in human cancers

G Banik, CB Betts, SM Liudahl, S Sivagnanam… - Methods in …, 2020 - Elsevier
Biomarker assessments of tumor specimens is widely used in cancer research to audit tumor
cell intrinsic as well as tumor cell extrinsic features including the diversity of immune …

Unraveling the complexity of the cancer microenvironment with multidimensional genomic and cytometric technologies

NL De Vries, A Mahfouz, F Koning… - Frontiers in …, 2020 - frontiersin.org
Cancers are characterized by extensive heterogeneity that occurs intratumorally, between
lesions, and across patients. To study cancer as a complex biological system …