TINC—a method to dissect regulatory complexes at single-locus resolution—reveals an extensive protein complex at the nanog promoter

AS Knaupp, M Mohenska, MR Larcombe, E Ford… - Stem cell reports, 2020 - cell.com
Cellular identity is ultimately dictated by the interaction of transcription factors with regulatory
elements (REs) to control gene expression. Advances in epigenome profiling techniques …

Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

X Chen, H Xu, P Yuan, F Fang, M Huss, VB Vega… - Cell, 2008 - cell.com
Transcription factors (TFs) and their specific interactions with targets are crucial for
specifying gene-expression programs. To gain insights into the transcriptional regulatory …

Analysis of the mouse embryonic stem cell regulatory networks obtained by ChIP-chip and ChIP-PET

D Mathur, TW Danford, LA Boyer, RA Young… - Genome biology, 2008 - Springer
Background Genome-wide approaches have begun to reveal the transcriptional networks
responsible for pluripotency in embryonic stem (ES) cells. Chromatin Immunoprecipitation …

Genome-wide shRNA screening to identify factors mediating Gata6 repression in mouse embryonic stem cells

S Cooper, N Brockdorff - Development, 2013 - journals.biologists.com
The use of whole-genome pooled shRNA libraries in loss-of-function screening in tissue
culture models provides an effective means to identify novel factors acting in pathways of …

Nanog Expression in Embryonic Stem Cells – An Ideal Model System to Dissect Enhancer Function

S Blinka, S Rao - BioEssays, 2017 - Wiley Online Library
Embryonic stem cells (ESCs) are derived from the preimplantation embryo and can
differentiate into virtually any other cell type (termed pluripotency), which is governed by …

Transcriptional regulation in embryonic stem cells

JCD Heng, HH Ng - The Cell Biology of Stem Cells, 2010 - Springer
Transcriptional regulation is a pivotal process that confers cellular identity and modulates
the biological activities within a cell. In embryonic stem cells (ESCs), the intricate interplay …

Global identification of transcriptional regulators of pluripotency and differentiation in embryonic stem cells

KJ Won, Z Xu, X Zhang, JW Whitaker… - Nucleic Acids …, 2012 - academic.oup.com
Human embryonic stem cells (hESCs) hold great promise for regenerative medicine
because they can undergo unlimited self-renewal and retain the capability to differentiate …

Transcriptional regulatory mechanisms that govern embryonic stem cell fate

S Das, D Levasseur - Embryonic Stem Cell Immunobiology: Methods and …, 2013 - Springer
Embryonic stem cells (ESCs) are defined by their simultaneous capacity for limitless self-
renewal and the ability to specify cells borne of all germ layers. The regulation of ESC …

Genome-wide chromatin interactions of the Nanog locus in pluripotency, differentiation, and reprogramming

E Apostolou, F Ferrari, RM Walsh, O Bar-Nur… - Cell stem cell, 2013 - cell.com
The chromatin state of pluripotency genes has been studied extensively in embryonic stem
cells (ESCs) and differentiated cells, but their potential interactions with other parts of the …

Locus-Specific Isolation of the Nanog Chromatin Identifies Regulators Relevant to Pluripotency of Mouse Embryonic Stem Cells and Reprogramming of Somatic Cells

AK Burramsetty, K Nishimura, T Kishimoto… - International Journal of …, 2022 - mdpi.com
Pluripotency is a crucial feature of pluripotent stem cells, which are regulated by the core
pluripotency network consisting of key transcription factors and signaling molecules …