[PDF][PDF] Dynamic regulation of transcription factors by nucleosome remodeling

M Li, P Sen, L Olufemi, A Hada, MA Hall, BY Smith… - Biophysical …, 2014 - cell.com
In eukaryotic cells, transcription activation and repression are regulated by transcription
factors (TFs) and nucleosomes. Although it has been demonstrated that a TF and a …

[HTML][HTML] Nucleosome sliding via TBP DNA binding in vivo

S Lomvardas, D Thanos - Cell, 2001 - cell.com
Here, we show that a nucleosome obstructing transcription from the IFN-β promoter slides in
vivo in response to virus infection, thus exposing the previously masked TATA box and the …

Dynamic regulation of transcription factors by nucleosome remodeling

M Li, A Hada, P Sen, L Olufemi, MA Hall, BY Smith… - Elife, 2015 - elifesciences.org
The chromatin landscape and promoter architecture are dominated by the interplay of
nucleosome and transcription factor (TF) binding to crucial DNA sequence elements …

[PDF][PDF] Nonspecific transcription-factor-DNA binding influences nucleosome occupancy in yeast

A Afek, I Sela, N Musa-Lempel, DB Lukatsky - Biophysical journal, 2011 - cell.com
Quantitative understanding of the principles regulating nucleosome occupancy on a
genome-wide level is a central issue in eukaryotic genomics. Here, we address this question …

Perturbation of nucleosome core structure by the SWI/SNF complex persists after its detachment, enhancing subsequent transcription factor binding

J Côté, CL Peterson… - Proceedings of the …, 1998 - National Acad Sciences
To investigate the mechanism of SWI/SNF action, we have analyzed the pathway by which
SWI/SNF stimulates formation of transcription factor-bound nucleosome core complexes. We …

Dynamic properties of nucleosomes during thermal and ATP-driven mobilization

A Flaus, T Owen-Hughes - Molecular and cellular biology, 2003 - Taylor & Francis
The fundamental subunit of chromatin, the nucleosome, is not a static entity but can move
along DNA via either thermal or enzyme-driven movements. Here we have monitored the …

[HTML][HTML] Distinct strategies to make nucleosomal DNA accessible

HY Fan, X He, RE Kingston, GJ Narlikar - Molecular cell, 2003 - cell.com
One hallmark of ATP-dependent remodeling complexes is the ability to make nucleosomal
DNA accessible to regulatory factors. We have compared two prominent human ATP …

Nucleosomes accelerate transcription factor dissociation

Y Luo, JA North, SD Rose, MG Poirier - Nucleic acids research, 2014 - academic.oup.com
Transcription factors (TF) bind DNA-target sites within promoters to activate gene
expression. TFs target their DNA-recognition sequences with high specificity by binding with …

Nucleosome allostery in pioneer transcription factor binding

C Tan, S Takada - Proceedings of the National Academy of …, 2020 - National Acad Sciences
While recent experiments revealed that some pioneer transcription factors (TFs) can bind to
their target DNA sequences inside a nucleosome, the binding dynamics of their target …

[PDF][PDF] DNA instructed displacement of histones H2A and H2B at an inducible promoter

GP Vicent, AS Nacht, CL Smith, CL Peterson… - Molecular Cell, 2004 - cell.com
Regulation of gene expression requires dynamic changes in chromatin, but the nature of
these changes is not well understood. Here, we show that progesterone treatment of …