[PDF][PDF] The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution

O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy… - Cell, 2020 - cell.com
Crucial transitions in cancer—including tumor initiation, local expansion, metastasis, and
therapeutic resistance—involve complex interactions between cells within the dynamic …

Mapping genomic and epigenomic evolution in cancer ecosystems

T Ushijima, SJ Clark, P Tan - Science, 2021 - science.org
Cancer is a major cause of global mortality underpinned by genomic and epigenomic
derangements. Here, we highlight the importance of multimodal data integration in …

[PDF][PDF] The cancer genome atlas: creating lasting value beyond its data

C Hutter, JC Zenklusen - Cell, 2018 - cell.com
The Cancer Genome Atlas: Creating Lasting Value beyond Its Data Page 1 Leading Edge
Commentary The Cancer Genome Atlas: Creating Lasting Value beyond Its Data Carolyn …

[HTML][HTML] Spatial transcriptomics reveals distinct and conserved tumor core and edge architectures that predict survival and targeted therapy response

R Arora, C Cao, M Kumar, S Sinha, A Chanda… - Nature …, 2023 - nature.com
The spatial organization of the tumor microenvironment has a profound impact on biology
and therapy response. Here, we perform an integrative single-cell and spatial transcriptomic …

The spatial and genomic hierarchy of tumor ecosystems revealed by single-cell technologies

EA Smith, HC Hodges - Trends in cancer, 2019 - cell.com
Many malignancies display heterogeneous features that support cancer progression.
Emerging high-resolution methods provide a view of heterogeneity that recognizes the …

The case for a pre-cancer genome atlas (PCGA)

JD Campbell, SA Mazzilli, ME Reid, SS Dhillon… - Cancer prevention …, 2016 - AACR
Understanding the earliest molecular and cellular events associated with cancer initiation
remains a key bottleneck to transforming our approach to cancer prevention and detection …

Pan-cancer molecular classes transcending tumor lineage across 32 cancer types, multiple data platforms, and over 10,000 cases

F Chen, Y Zhang, DL Gibbons, B Deneen… - Clinical Cancer …, 2018 - AACR
Abstract Purpose: The Cancer Genome Atlas data resources represent an opportunity to
explore commonalities across cancer types involving multiple molecular levels, but tumor …

[PDF][PDF] Perspective on oncogenic processes at the end of the beginning of cancer genomics

L Ding, MH Bailey, E Porta-Pardo, V Thorsson… - Cell, 2018 - cell.com
Summary The Cancer Genome Atlas (TCGA) has catalyzed systematic characterization of
diverse genomic alterations underlying human cancers. At this historic junction marking the …

[HTML][HTML] Single-cell morphological and topological atlas reveals the ecosystem diversity of human breast cancer

S Zhao, DP Chen, T Fu, JC Yang, D Ma, XZ Zhu… - Nature …, 2023 - nature.com
Digital pathology allows computerized analysis of tumor ecosystem using whole slide
images (WSIs). Here, we present single-cell morphological and topological profiling (sc …

[HTML][HTML] The human body at cellular resolution: the NIH Human Biomolecular Atlas Program

Caltech-UW TMC Cai Long lcai@ caltech. edu 21 b … - Nature, 2019 - nature.com
Transformative technologies are enabling the construction of three-dimensional maps of
tissues with unprecedented spatial and molecular resolution. Over the next seven years, the …