Deep learning in clinical natural language processing: a methodical review

S Wu, K Roberts, S Datta, J Du, Z Ji, Y Si… - Journal of the …, 2020 - academic.oup.com
Objective This article methodically reviews the literature on deep learning (DL) for natural
language processing (NLP) in the clinical domain, providing quantitative analysis to answer …

Generative AI in medicine and healthcare: Promises, opportunities and challenges

P Zhang, MN Kamel Boulos - Future Internet, 2023 - mdpi.com
Generative AI (artificial intelligence) refers to algorithms and models, such as OpenAI's
ChatGPT, that can be prompted to generate various types of content. In this narrative review …

A large language model for electronic health records

X Yang, A Chen, N PourNejatian, HC Shin… - NPJ digital …, 2022 - nature.com
There is an increasing interest in developing artificial intelligence (AI) systems to process
and interpret electronic health records (EHRs). Natural language processing (NLP) powered …

Enhancing clinical concept extraction with contextual embeddings

Y Si, J Wang, H Xu, K Roberts - Journal of the American Medical …, 2019 - academic.oup.com
Objective Neural network–based representations (“embeddings”) have dramatically
advanced natural language processing (NLP) tasks, including clinical NLP tasks such as …

Clinical concept extraction using transformers

X Yang, J Bian, WR Hogan, Y Wu - Journal of the American …, 2020 - academic.oup.com
Objective The goal of this study is to explore transformer-based models (eg, Bidirectional
Encoder Representations from Transformers [BERT]) for clinical concept extraction and …

A clinical text classification paradigm using weak supervision and deep representation

Y Wang, S Sohn, S Liu, F Shen, L Wang… - BMC medical informatics …, 2019 - Springer
Background Automatic clinical text classification is a natural language processing (NLP)
technology that unlocks information embedded in clinical narratives. Machine learning …

Comparing deep learning and concept extraction based methods for patient phenotyping from clinical narratives

S Gehrmann, F Dernoncourt, Y Li, ET Carlson, JT Wu… - PloS one, 2018 - journals.plos.org
In secondary analysis of electronic health records, a crucial task consists in correctly
identifying the patient cohort under investigation. In many cases, the most valuable and …

[HTML][HTML] Character-level neural network for biomedical named entity recognition

M Gridach - Journal of biomedical informatics, 2017 - Elsevier
Biomedical named entity recognition (BNER), which extracts important named entities such
as genes and proteins, is a challenging task in automated systems that mine knowledge in …

[HTML][HTML] Clinical concept extraction: a methodology review

S Fu, D Chen, H He, S Liu, S Moon, KJ Peterson… - Journal of biomedical …, 2020 - Elsevier
Background Concept extraction, a subdomain of natural language processing (NLP) with a
focus on extracting concepts of interest, has been adopted to computationally extract clinical …

GatorTron: a large clinical language model to unlock patient information from unstructured electronic health records

X Yang, A Chen, N PourNejatian, HC Shin… - arXiv preprint arXiv …, 2022 - arxiv.org
There is an increasing interest in developing artificial intelligence (AI) systems to process
and interpret electronic health records (EHRs). Natural language processing (NLP) powered …