Modern clinical text mining: a guide and review

B Percha - Annual review of biomedical data science, 2021 - annualreviews.org
Electronic health records (EHRs) are becoming a vital source of data for healthcare quality
improvement, research, and operations. However, much of the most valuable information …

Clinical concept extraction using transformers

X Yang, J Bian, WR Hogan, Y Wu - Journal of the American …, 2020 - academic.oup.com
Objective The goal of this study is to explore transformer-based models (eg, Bidirectional
Encoder Representations from Transformers [BERT]) for clinical concept extraction and …

[HTML][HTML] Character-level neural network for biomedical named entity recognition

M Gridach - Journal of biomedical informatics, 2017 - Elsevier
Biomedical named entity recognition (BNER), which extracts important named entities such
as genes and proteins, is a challenging task in automated systems that mine knowledge in …

[HTML][HTML] Unsupervised biomedical named entity recognition: Experiments with clinical and biological texts

S Zhang, N Elhadad - Journal of biomedical informatics, 2013 - Elsevier
Named entity recognition is a crucial component of biomedical natural language processing,
enabling information extraction and ultimately reasoning over and knowledge discovery …

Learning for biomedical information extraction: Methodological review of recent advances

F Liu, J Chen, A Jagannatha, H Yu - arXiv preprint arXiv:1606.07993, 2016 - arxiv.org
Biomedical information extraction (BioIE) is important to many applications, including clinical
decision support, integrative biology, and pharmacovigilance, and therefore it has been an …

Ontology-based semi-supervised conditional random fields for automated information extraction from bridge inspection reports

K Liu, N El-Gohary - Automation in construction, 2017 - Elsevier
A large amount of detailed data about bridge conditions and maintenance actions are buried
in bridge inspection reports without being used. Information extraction and data analytics …

A comprehensive study of named entity recognition in Chinese clinical text

J Lei, B Tang, X Lu, K Gao, M Jiang… - Journal of the American …, 2014 - academic.oup.com
Objective Named entity recognition (NER) is one of the fundamental tasks in natural
language processing. In the medical domain, there have been a number of studies on NER …

[HTML][HTML] Evaluating word representation features in biomedical named entity recognition tasks

B Tang, H Cao, X Wang, Q Chen, H Xu - BioMed research …, 2014 - hindawi.com
Biomedical Named Entity Recognition (BNER), which extracts important entities such as
genes and proteins, is a crucial step of natural language processing in the biomedical …

Clinical concept and relation extraction using prompt-based machine reading comprehension

C Peng, X Yang, Z Yu, J Bian… - Journal of the …, 2023 - academic.oup.com
Objective To develop a natural language processing system that solves both clinical concept
extraction and relation extraction in a unified prompt-based machine reading …

A hybrid system for temporal information extraction from clinical text

B Tang, Y Wu, M Jiang, Y Chen… - Journal of the …, 2013 - academic.oup.com
Objective To develop a comprehensive temporal information extraction system that can
identify events, temporal expressions, and their temporal relations in clinical text. This …