Thinking about the evolution of complex traits in the era of genome-wide association studies

G Sella, NH Barton - Annual review of genomics and human …, 2019 - annualreviews.org
Many traits of interest are highly heritable and genetically complex, meaning that much of
the variation they exhibit arises from differences at numerous loci in the genome. Complex …

Causal effects on complex traits are similar for common variants across segments of different continental ancestries within admixed individuals

K Hou, Y Ding, Z Xu, Y Wu, A Bhattacharya, R Mester… - Nature …, 2023 - nature.com
Individuals of admixed ancestries (for example, African Americans) inherit a mosaic of
ancestry segments (local ancestry) originating from multiple continental ancestral …

[HTML][HTML] Polygenic scoring accuracy varies across the genetic ancestry continuum

Y Ding, K Hou, Z Xu, A Pimplaskar, E Petter, K Boulier… - Nature, 2023 - nature.com
Polygenic scores (PGSs) have limited portability across different groupings of individuals (for
example, by genetic ancestries and/or social determinants of health), preventing their …

A review of SNP heritability estimation methods

M Tang, T Wang, X Zhang - Briefings in bioinformatics, 2022 - academic.oup.com
Over the past decade, statistical methods have been developed to estimate single
nucleotide polymorphism (SNP) heritability, which measures the proportion of phenotypic …

[HTML][HTML] Solving the missing heritability problem

AI Young - PLoS genetics, 2019 - journals.plos.org
The problem of missing heritability, that is to say the gap between heritability estimates from
genotype data and heritability estimates from twin data, has been a source of debate for …

Evaluating and improving heritability models using summary statistics

D Speed, J Holmes, DJ Balding - Nature genetics, 2020 - nature.com
There is currently much debate regarding the best model for how heritability varies across
the genome. The authors of GCTA recommend the GCTA-LDMS-I model, the authors of LD …

[HTML][HTML] Assortative mating biases marker-based heritability estimators

R Border, S O'Rourke, T de Candia… - Nature …, 2022 - nature.com
Many traits are subject to assortative mating, with recent molecular genetic findings
confirming longstanding theoretical predictions that assortative mating induces long range …

Improving GWAS discovery and genomic prediction accuracy in biobank data

EJ Orliac, D Trejo Banos, SE Ojavee… - Proceedings of the …, 2022 - National Acad Sciences
Genetically informed, deep-phenotyped biobanks are an important research resource and it
is imperative that the most powerful, versatile, and efficient analysis approaches are used …

[PDF][PDF] Localizing components of shared transethnic genetic architecture of complex traits from GWAS summary data

H Shi, KS Burch, R Johnson, MK Freund… - The American Journal of …, 2020 - cell.com
Despite strong transethnic genetic correlations reported in the literature for many complex
traits, the non-transferability of polygenic risk scores across populations suggests the …

[HTML][HTML] A versatile, fast and unbiased method for estimation of gene-by-environment interaction effects on biobank-scale datasets

M Di Scipio, M Khan, S Mao, M Chong, C Judge… - Nature …, 2023 - nature.com
Identification of gene-by-environment interactions (GxE) is crucial to understand the
interplay of environmental effects on complex traits. However, current methods evaluating …