Natural language processing in medicine: a review

S Locke, A Bashall, S Al-Adely, J Moore… - Trends in Anaesthesia …, 2021 - Elsevier
Natural language processing (NLP) is a form of machine learning which enables the
processing and analysis of free text. When used with medical notes, it can aid in the …

[HTML][HTML] Secondary use of clinical data: the Vanderbilt approach

I Danciu, JD Cowan, M Basford, X Wang, A Saip… - Journal of biomedical …, 2014 - Elsevier
The last decade has seen an exponential growth in the quantity of clinical data collected
nationwide, triggering an increase in opportunities to reuse the data for biomedical research …

Automatic extraction of cancer registry reportable information from free-text pathology reports using multitask convolutional neural networks

M Alawad, S Gao, JX Qiu, HJ Yoon… - Journal of the …, 2020 - academic.oup.com
Objective We implement 2 different multitask learning (MTL) techniques, hard parameter
sharing and cross-stitch, to train a word-level convolutional neural network (CNN) …

[HTML][HTML] Deciphering clinical abbreviations with a privacy protecting machine learning system

A Rajkomar, E Loreaux, Y Liu, J Kemp, B Li… - Nature …, 2022 - nature.com
Physicians write clinical notes with abbreviations and shorthand that are difficult to decipher.
Abbreviations can be clinical jargon (writing “HIT” for “heparin induced thrombocytopenia”) …

[HTML][HTML] Machine learning-driven clinical decision support system for concept-based searching: a field trial in a Norwegian hospital

GT Berge, OC Granmo, TO Tveit, BE Munkvold… - BMC Medical Informatics …, 2023 - Springer
Background Natural language processing (NLP) based clinical decision support systems
(CDSSs) have demonstrated the ability to extract vital information from patient electronic …

[PDF][PDF] Clinical abbreviation disambiguation using neural word embeddings

Y Wu, J Xu, Y Zhang, H Xu - Proceedings of BioNLP 15, 2015 - aclanthology.org
This study examined the use of neural word embeddings for clinical abbreviation
disambiguation, a special case of word sense disambiguation (WSD). We investigated three …

Natural language processing in nephrology

TT Van Vleck, D Farrell, L Chan - Advances in chronic kidney disease, 2022 - Elsevier
Unstructured data in the electronic health records contain essential patient information.
Natural language processing (NLP), teaching a computer to read, allows us to tap into these …

A long journey to short abbreviations: developing an open-source framework for clinical abbreviation recognition and disambiguation (CARD)

Y Wu, JC Denny, S Trent Rosenbloom… - Journal of the …, 2017 - academic.oup.com
Objective: The goal of this study was to develop a practical framework for recognizing and
disambiguating clinical abbreviations, thereby improving current clinical natural language …

[HTML][HTML] A deep database of medical abbreviations and acronyms for natural language processing

L Grossman Liu, RH Grossman, EG Mitchell, C Weng… - Scientific Data, 2021 - nature.com
The recognition, disambiguation, and expansion of medical abbreviations and acronyms is
of upmost importance to prevent medically-dangerous misinterpretation in natural language …

State-of-the-art in biomedical literature retrieval for clinical cases: a survey of the TREC 2014 CDS track

K Roberts, M Simpson, D Demner-Fushman… - Information Retrieval …, 2016 - Springer
Providing access to relevant biomedical literature in a clinical setting has the potential to
bridge a critical gap in evidence-based medicine. Here, our goal is specifically to provide …