[PDF][PDF] Admix-kit: an integrated toolkit and pipeline for genetic analyses of admixed populations

K Hou, S Gogarten, J Kim, X Hua, JA Dias, Q Sun… - …, 2024 - academic.oup.com
Admixed populations, with their unique and diverse genetic backgrounds, are often
underrepresented in genetic studies. This oversight not only limits our understanding but …

Haptools: a toolkit for admixture and haplotype analysis

AR Massarat, M Lamkin, C Reeve, AL Williams… - …, 2023 - academic.oup.com
Leveraging local ancestry and haplotype information in genome-wide association studies
and downstream analyses can improve the utility of genomics for individuals from diverse …

Strategies for the genomic analysis of admixed populations

T Tan, EG Atkinson - Annual review of biomedical data science, 2023 - annualreviews.org
Admixed populations constitute a large portion of global human genetic diversity, yet they
are often left out of genomics analyses. This exclusion is problematic, as it leads to …

Statistical inference in admixed populations

K Grinde - 2019 - digital.lib.washington.edu
Understanding the genetic causes of human diseases and traits has long been of interest in
the scientific community. However, the large majority of research in this area has been …

JasMAP: A Joint Ancestry and SNP Association Method for a Multi-way Admixed Population

JW Mugo, ER Chimusa, NJ Mulder - medRxiv, 2023 - medrxiv.org
The large volume of research findings submitted to the GWAS catalog in the last decade is a
clear indication of the exponential progress of these studies and association approaches …

Influence of Admixture on Phenotypes

SW Brugger, MF Davis - Current Protocols, 2023 - Wiley Online Library
Individuals of European descent have historically been the focus of genetic studies and
possess relatively homogenous genomes. As a result, analytical methods have been …

A benchmark study on current GWAS models in admixed populations

Z Yang, B Cieza, D Reyes-Dumeyer… - Briefings in …, 2024 - academic.oup.com
Objective The performances of popular genome-wide association study (GWAS) models
have not been examined yet in a consistent manner under the scenario of genetic …

[HTML][HTML] LEI: a novel allele frequency-based feature selection method for multi-ancestry admixed populations

MJ Wathen, Y Gautam, S Ghandikota, MB Rao… - Scientific reports, 2019 - nature.com
Next-generation sequencing technologies now make it possible to sequence and genotype
hundreds of thousands of genetic markers across the human genome. Selection of …

Simplified detection of genetic background admixture using artificial intelligence

R Pauly, F Alexander Feltus - Clinical Genetics, 2024 - Wiley Online Library
Admixture refers to the mixing of genetic ancestry from different populations. Admixture is
important for genomic medicine because it can affect how an individual responds to certain …

FFselect: An improved linear mixed model for genome-wide association study in populations featuring shared environments confounded by relatedness

N Schultz, K Weigel - bioRxiv, 2020 - biorxiv.org
Linear mixed models are effective tools to identify genetic loci contributing to phenotypic
variation while handling confounding due to population structure and cryptic relatedness …